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Code Block |
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ls *_R1*.fastq.gz -lh | awk '{print $9}' >gz > read1 ls *_R2*.fastq.gz -lh | awk '{print $9}' >gz > read2 |
2. List the sample IDs. If the sample names are in the sample files, they can be extracted using sed. For example:
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...
Code Block |
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ls *_R1*.fastq.gz -lh | awk '{print $9}' >gz > read1 ls *_R2*.fastq.gz -lh | awk '{print $9}' >gz > read2 |
2. List the sample IDs. If the sample names are in the sample files, they can be extracted using sed. For example:
...