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Data requirements change depending on the step you start with. Check the Sarek documentation for details.nextflow run nf-core/sarek -profile test,singularity
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#run test
nextflow run nf-core/sarek -profile test,singularity
#resume
nextflow run nf-core/sarek -profile test,singularity -resume |
Preparing Data
Starting the Sarek workflow at the “mapping” step requires paired fastq files (See Sarek documentation for details). You need to create a suitable TAB separated text file that will be the input for the workflow. Mapping requires the following columns
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