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module load java curl -s https://get.nextflow.io | bash mv nextflow $HOME/bin #verify Nextflow is installed mkdir $HOME/nextflownftemp && cd $HOME/nextflownftemp nextflow run hello cd $HOME rm -rf nftemp |
Line 1: The module load command is necessary to ensure java is available
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Line 3: When finished, the nextflow binary will be in the current folder so it should be moved to your “bin” folder” so it can be found later.
Line 5: Nextflow creates Make a temporary folder for Nextflow to create files when it runs so make a folder to store these files.
Line 6: Verify Nextflow is working.
Line 7 and 8: Clean up
Nextflow’s Default Configuration
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