Prepared by the eResearch Office, QUT.
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| Code Block |
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nextflow run nf-core/rnaseq \
--input samplesheet.csv \
--genome GRCm38 \
--aligner star \
-profile condasingularity |
Note, if the running was interrupted or did not complete a particular step or you want to modify a parameter for a particular step, instead of re-running all process again nextflow enables to “-resume” the workflow.
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nextflow run nf-core/rnaseq \
--input samplesheet.csv \
--genome GRCm38 \
--aligner star \
-profile singularity conda\
-resume |
Preparing a ‘samplesheet.csv’ file
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In the folder you have created for this run create launch.pbs using a text editor (i.e., vim, nano)
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