Prepared by the eResearch Office, QUT.
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In the folder you have created for this run create launch.pbs using a text editor (i.e., vim, nano)
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#!/bin/bash -l #PBS -N nfrna2 #PBS -l select=1:ncpus=2:mem=4gb #PBS -l walltime=24:00:00 cd $PBS_O_WORKDIR module load java NXF_OPTS='-Xms1g -Xmx4g' nextflow run nf-core/rnaseq -profile condasingularity --input samplesheet.csv --genome GRCm38 --alignedaligner star_rsem --min_mapped_reads 5 |
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