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changes.mady.by.user Roberto Barrero Gumiel

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Code Block
cat metadata.txt | awk '{print $1}' | sed 1d > SraAccList.txt

Check SraAccList.txt (i.e., cat SraAccList.txt):

Code Block
SRR1039508
SRR1039509
SRR1039512
SRR1039513
SRR1039516
SRR1039517
SRR1039520
SRR1039521

Once the list of wanted SRA accession IDs is ready, use a PBS Pro submission script to fetch all the sequences. Note, data will be downloaded to the folder where the job is submitted. Example script (fetch_SraAccList.pbs):

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