Today’s goal:
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Copy the “salmon.merged.gene_counts.tsv” to your laptop and we will use it for statistical analysis using BioJupies (see below)
Differential gene expression analysis
Differential expression analysis using https://maayanlab.cloud/biojupies/analyze
From session 2, we will use the feature counts generated using the ‘star_salmon’ parameter setting. Either copy the relevant files (see below) to your laptop from the HPC or download the files below.
File | File name | File | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Gene feature counts | salmon_merged.gene_counts.tsv |
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Transcript feature counts | salmon_merged.transcript_counts.tsv |
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