...
| Code Block |
|---|
#!/bin/bash -l
#PBS -N jobname
#PBS -l walltime=48:00:00
#PBS -l select=1:ncpus=1:mem=5gb
#PBS -m abe
cd $PBS_O_WORKDIR
NXF_OPTS='-Xms1g -Xmx4g'
module load java
singularity remote use QUT
nextflow run consgenome -resume
singularity remote use SylabsCloud
chmod -R g+rwX results/
chmod -R g+rwX work/ |
If you wish to use the conda version of the pipeline use this script:
| Code Block |
|---|
#!/bin/bash -l
#PBS -N jobname
#PBS -l walltime=48:00:00
#PBS -l select=1:ncpus=1:mem=5gb
#PBS -m abe
cd $PBS_O_WORKDIR
NXF_OPTS='-Xms1g -Xmx4g'
module load java
nextflow run consgenome -profile conda -resume
chmod -R g+rwX results/
chmod -R g+rwX work/ |
Step 5:
Launch the pipeline
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