Anacapa is a toolkit designed to construct reference databases and assign taxonomy.
The purpose of this guide is to step
For more details on anacapa, please read though the anacapa Github page.
https://github.com/limey-bean/Anacapa
This
Requirements
A QUT HPC account
:
Purpose of this guide
This guide is designed to step you though running the anacapa toolkit on QUTs HPC, as the published anacapa documentation on Github can be a bit hard to follow and needs some modification to work on the HPC.
Requirements
Your sample files, which should be demultiplexed Illumina sequences in fastq format.
A table of the barcodes and adapters
...
used to amplify your sequences. If you don’t already have these, you can usually request them from the organisation that sequenced your samples.
A QUT HPC account.
A basic knowledge of Linux command line operation and usage of QUT’s HPC is strongly recommended, but not required, as all the command line instructions are explicitly explained and can usually simply be cut and pasted into your HPC command line.
An overview of HPC commands and usage, as well as a link for requesting access to the HPC (if you don’t currently have a HPC account) is here:
There are plenty of online guides that teach basic Linux command line usage, for example: