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If you’re testing several tools or running multiple separate commands then an interactive PBS session may be preferable. Below is the command to create an interactive PBS session with 8 CPUs and , 64GB memory and a maximum running time of 11 hours (12 hours is the absolute maximum that can be requested for an interactive session).
*Note: In this guide, commands to be entered by the user will be in grey boxes like the one below. As with most commands, you can simply cut and paste this into your command line. You can hover your mouse over the code box to see a ‘copy’ button on the right. Just click this to copy all the code in the box.
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qsub -I -S /bin/bash -l walltime=11:00:00 -l select=1:ncpus=8:mem=64gb |
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From your home directory, create a subdirectory called ‘anacapa’ and enter this subdirectory. This guide has commands that assume your
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cd ~ mkdir anacapa cd anacapa |
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