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mkdir ~/anacapa/crux_db/Obitools_databases mkdir ~/anacapa/crux_db/Obitools_databases/OB_dat_120322_EMBL_std_mam |
The naming of these directories is important, as the CRUX script automatically looks in the /crux_db/Obitools_databases directory for any databases beginning with OB_dat_.
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singularity exec ~/anacapa/anacapa-1.5.0.img obiconvert -t ~/anacapa/crux_db/TAXO --embl --ecopcrdb-output=~/anacapa/crux_db/Obitools_databases/OB_dat_120322_EMBL_std_mam/OB_dat_120322_EMBL_std_mam ~/anacapa/crux_db/EMBL/*.dat --skip-on-error |
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