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#!/bin/bash -l #PBS -N nf-bactmap #PBS -l walltime=24:00:00 #PBS -l select=1:ncpus=1:mem=5gb cd $PBS_O_WORKDIR NXF_OPTS='-Xms1g -Xmx4g' module load java #run test for bactmap nextflow run nf-core/bactmap -profile test,singularity |
submit the job:
| Code Block |
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qsub launch.pbs |
Running the pipeline using custom data
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