...
| Code Block |
|---|
singularity run docker://ncbi/sra-tools:latest fastq-dump -X 1000000 -I --split-files SRR1198667 |
3.a compress the fastq files
| Code Block |
|---|
gzip -c filename.fastq > filename.fastq.gz |
3.b batch:
| Code Block |
|---|
for file in `ls *.fastq`; do echo $file; gzip -c $file > ${file}.gz; done |
...