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Note: at this time, the test profile will fail to run
Running the test
| Code Block |
|---|
#!/bin/bash -l
#PBS -N nf-bactmap
#PBS -l walltime=168:00:00
#PBS -l select=1:ncpus=1:mem=5gb
cd $PBS_O_WORKDIR
NXF_OPTS='-Xms1g -Xmx4g'
module load java
#run test for bactmap
nextflow run nf-core/bactmap -profile test,singularity |
Running the pipeline using custom data
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