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Usage: https://nf-co.re/bactmap/1.0.0/usage
SRA TOOLKIT
Use singularity container to fetch public data on the HPC:
| Code Block |
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singularity run docker://ncbi/sra-tools:latest prefetch SRR1198667 |
| Code Block |
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singularity run docker://ncbi/sra-tools:latest fastq-dump -X 1000000 -I --split-files SRR1198667 |
Pipeline summary
Getting Started
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