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conda install flye |
b) Convert FASTQ to FASTA
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conda install -c bioconda seqkit |
c) install blast
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name: flye
channels:
- defaults
- anaconda
- bioconda
- conda-forge
dependencies:
- python=3.7
- flye=2.9.1
- seqkit=2.3.1
- blast=2.13.0 |
Run the following command to generate the ‘nanoQ’ conda environment:
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conda env create -f environment.yml |
Activate the environment to access the installed tools:
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conda activate flye |
c) Run a de novo assembly test run
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