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| Code Block |
|---|
nextflow run nf-core/rnaseq --input samplesheet.csv \
--outdir results \
-r 3.12.0 \
--genome GRCh38 \
-profile singularity \
--aligner star_salmon \
--extra_trimgalore_args "--clip_r1 1210 --clip_r2 1210 --three_prime_clip_r1 21 --three_prime_clip_r2 21 " |
Submitting the job
Once you have created the folder for the run, the samplesheet.csv file, nextflow.config, and launch.pbs, you are ready to submit.
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