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#!/bin/bash -l
#PBS -N nfrna2nfrnaseq_test
#PBS -l select=1:ncpus=2:mem=4gb
#PBS -l walltime=24:00:00

#work on current directory (folder)
cd $PBS_O_WORKDIR

#load java and set up memory settings to run nextflow
module load java
NXF_OPTS='-Xms1g -Xmx4g'

nextflow run nf-core/rnaseq -profile test,singularity --outdir results -r 3.12.0