Page Comparison

Now let’s copy the ‘salmon.merged.gene_counts.tsv’ file to your laptop/desktop using the file finder.

• Windows - in the file finder type: \\hpc-fasfs\work\

• Mac - open ‘Finder’ → press ‘command + k’ → type: ‘smb://hpc-fs/work/’

Now let’s find the full path to the ‘salmon.merged.gene_counts.tsv’ file:

• Windows:

  • see: https://www.lifewire.com/change-directories-in-command-prompt-5185508

• Mac:

  • cd /folder/that/contains/feature_counts/

  • pwd

• Rstudio:

  • Open Rstudio, go to the top bar a click on “Session” → “Select working directory: → “Choose directory”

  • The path to the directory will be printed in Rstudio console, copy and paste in line 1 of the script ‘RNAseq_DESeq2_analysis.R’ (see below)