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To access this count table:
Go to the W:\training\rnaseq\runs\run3_RNAseq\results folder that contains the results from running the nfcore/rnaseq pipeline. The output folders from task 3 look like this:
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The count table can be found in the /results/star_salmon / folder. Let’s access the folder (i.e., cd /run3/results/star_salmon). A list of files and folders in the star_salmon folder will look like this:
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a. First create a new folder in H:\workshop\RNAseq . Call it something suitable, such as ‘DE_analysis_workshop’
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