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Connect to your HPC home directory
Using the Windows File Explorer, we can map our HPC Home folder and the shared Work folder to drive letters. Here we will map our home drive to ‘H' and our shared work directory to ‘W’.
Open File Explorer (folder icon in the Windows task bar).
Right click “This PC” and choose Map Network Drive.
Home drive: select ‘H' as the drive letter, then copy and paste \\hpc-fs\home into the Folder box. Click 'Finish’.
Work drive: In file Explorer, again right click “This PC” and choose Map Network Drive. select ‘W' as the drive letter, then copy and paste \\hpc-fs\work into the Folder box. Click 'Finish’.
To see this demonstrated watch this video:
https://mediahub.qut.edu.au/media/t/0_ylaejs40
Now you’ll be able to browse and copy files between your virtual Windows machine and the HPC.
Installing R and RStudio
Seurat is an R package, so first we need to install R and RStudio on the rVDI machine. You will be copying and pasting script from this workflow into RStudio.
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