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| Code Block |
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mkdir -p $HOME/workshop/ONTvariants mkdir -p $HOME/workshop/ONTvariants/data mkdir -p $HOME/workshop/ONTvariants/scripts mkdir -p $HOME/workshop/ONTvariants/runs/run1_QC mkdir -p $HOME/workshop/ONTvariants/runs/run2_mapping mkdir -p $HOME/workshop/ONTvariants/runs/run3_variant_calling |
Now, let copy the scripts and data for today’s session:
| Code Block |
|---|
cp /work/training/ONTvariants/data/* $HOME/workshop/ONTvariants/data
cp /work/training/ONTvariants/scripts/* $HOME/workshop/ONTvariants/scripts |
Install tools using conda
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