Create working folder and copy data
Let’s create an interactive session on the HPC:
| Code Block |
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qsub -I -S /bin/bash -l walltime=10:00:00 -l select=1:ncpus=2:mem=4gb |
Let’s create working folders for today. Copy and paste the following block of code into your terminal and hit enter for the last command:
| Code Block |
|---|
mkdir -p $HOME/workshop/ONTvariants
mkdir -p $HOME/workshop/ONTvariants/data
mkdir -p $HOME/workshop/ONTvariants/scripts
mkdir -p $HOME/workshop/ONTvariants/runs/run1_QC
mkdir -p $HOME/workshop/ONTvariants/runs/run2_mapping
mkdir -p $HOME/workshop/ONTvariants/runs/run3_variant_calling |
Install tools using conda
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