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Once the pipeline has finished running - Assess the results as follows:
NOTE: To proceed, you need to be on QUT’s WiFi network or signed via VPN.
To browse the working folder in the HPC type in the file finder:
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Metrics | dataset |
|---|---|
number_of_reads | 5513156 |
number_of_bases | 7815960904.0 |
median_read_length | 586.0 |
mean_read_length | 1417.7 |
read_length_stdev | 2997.2 |
n50 | 4054.0 |
mean_qual | 11.4 |
median_qual | 13.4 |
longest_read_(with_Q):1 | 199230 (3.7) |
longest_read_(with_Q):2 | 169532 (3.9) |
longest_read_(with_Q):3 | 134047 (3.6) |
longest_read_(with_Q):4 | 133337 (3.6) |
longest_read_(with_Q):5 | 115232 (3.3) |
highest_Q_read_(with_length):1 | 26.1 (290) |
highest_Q_read_(with_length):2 | 25.4 (202) |
highest_Q_read_(with_length):3 | 24.9 (331) |
highest_Q_read_(with_length):4 | 24.5 (232) |
highest_Q_read_(with_length):5 | 24.5 (243) |
Reads >Q5: | 5417207 (98.3%) 7502.8Mb |
Reads >Q7: | 5275906 (95.7%) 6978.9Mb |
Reads >Q10: | 4853447 (88.0%) 6056.6Mb |
Reads >Q12: | 3905370 (70.8%) 4809.9Mb |
Reads >Q15: | 1324999 (24.0%) 1571.9Mb |
Let’s first Next, let’s inspect the “SRR17138639_QC_LengthvsQualityScatterPlot_dot.png“ file. Alternatively for high resolution image open instead “SRR17138639_QC_LengthvsQualityScatterPlot_dot.html“
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