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. ├── launch_ONTvariants_QC.pbs ├── SRR17138639_1_porechop_abi_chopper_q10_300b.fa ├── SRR17138639_1_porechop_abi_chopper_q10_300b.fa_stats.txt ├── SRR17138639_1_porechop_abi_chopper_q10_300b.fastq ├── SRR17138639_1_porechop_abi.fastq ├── SRR17138639.fastq.gz ├── SRR17138639_QC_LengthvsQualityScatterPlot_dot.html ├── SRR17138639_QC_LengthvsQualityScatterPlot_dot.png ├── SRR17138639_QC_NanoPlot_20240517_2037.log ├── SRR17138639_QC_NanoPlot-report.html ├── SRR17138639_QC_NanoStats.txt ├── SRR17138639_QC_Non_weightedHistogramReadlength.html ├── SRR17138639_QC_Non_weightedHistogramReadlength.png ├── SRR17138639_QC_Non_weightedLogTransformed_HistogramReadlength.html ├── SRR17138639_QC_Non_weightedLogTransformed_HistogramReadlength.png ├── SRR17138639_QC_WeightedHistogramReadlength.html ├── SRR17138639_QC_WeightedHistogramReadlength.png ├── SRR17138639_QC_WeightedLogTransformed_HistogramReadlength.html ├── SRR17138639_QC_WeightedLogTransformed_HistogramReadlength.png ├── SRR17138639_QC_Yield_By_Length.html └── SRR17138639_QC_Yield_By_Length.png |
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As outputs find the porechop_abi processed file (SRR17138639_1_porechop_abi.fastq) and the chopper output (SRR17138639_1_porechop_abi_chopper_q10_300b.fastq). To visualise the QC reports, let’s connect to the HPC via file finder (see below).
NOTE: To proceed, you need to be on QUT’s WiFi network or signed via VPN.
To browse the working folder in the HPC type in the file finder:
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