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Full length amplicon vs hypervariable regions

https://data.eresearchqut.net/paulw/public/mahsa_manuscript2/index.html

https://nanoporetech.com/resource-centre/epi2me-16s-workflow-real-time-identification-bacteria-and-archaea Typically

https://nf-co.re/ampliseq/2.9.0/docs/usage#taxonomic-classification

https://data.eresearchqut.net/paulw/public/mahsa_manuscript2/index.html

ASV vs OTU

Taxonomic assignments in nfcore/ampliseq are based on Amplicon sequence variants (ASV), inferred using the DADA2 software package by matching the sample sequences to the SILVA ribosomal RNA sequence database.

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