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https://qutvirtual4.qut.edu.au/group/staff/research/conducting/facilities/advanced-research-computing-storage/supercomputing/using-hpc-filesystems

Create your workshop folders and check your data

In your Z drive (the drive you just mapped) check to see if there is an ASV_table.tsv in

Z:\meta_workshop\illumina\results\dada2

This is the base data file we’ll be working with - an abundance table of read counts per ASV (i.e. taxonomic group) per sample. Using this we’ll be able to quantify and visualise taxonomic diversity and structure, using R.

The analysis also requires the metadata.tsv file we created at the start of last workshop. Check to see if this file is in Z:\meta_workshop\illumina\data

If

Open PuTTY and run the following to create today’s workshop folder:

mkdir $HOME/home/whatmorp/meta_workshop/R_analysis

cp -r /work/training/metagenomics/public_data/Illumina/results $HOME/home/whatmorp/meta_workshop/illumina