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In the Alpha Diversity section, you already imported your da nfcore/ampliseq results and converted them to an ampvis2 object. To have another quick look at your ampvis object:
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ampvisdata |
As in the Alpha Diversity section, you need to choose a variable to work with.
You can view your variables as column names in your samples_table:
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colnames(samples_table) |
Enter Now enter the column name of the variable you want to analyse (i.e. change group <- "Myvariable" in the below cell to your chosen variable's column name). This has to be exactly the same as the column name, including capitalisation, characters such as underscores, etc.:
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group <- "Nose_size" |
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