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changes.mady.by.user Craig Windell

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changes.mady.by.user Vicki Thomson

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Copy and paste the following text into your Linux command line and hit ‘enter’. This will make a few small changes to your local account so that Nextflow can run correctly.

Code Block
[[ -d $HOME${HOME}/.nextflow ]] || mkdir -p $HOME${HOME}/.nextflow
cat <<EOF > $HOME${HOME}/.nextflow/config
singularity {
    cacheDir = '$HOME${HOME}/.nextflow/NXF_SINGULARITY_CACHEDIR'
    autoMounts = true
}
conda {
    cacheDir = '$HOME${HOME}/.nextflow/NXF_CONDA_CACHEDIR'
}
process {
  executor = 'pbspro'
  scratch = false
  cleanup = false
}
EOF

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