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• Be notified when the job starts, use the -m option eg be sent an email if the job is aborted, when it begins, and when it ends: #PBS -m abe

• Give the job a name: To find your job in a long list give it a meaning name with the -N option: #PBS -N MyJob01

• Merge the error file into the standard output file: #PBS -j oe

• Overriding the email address: If you want to send the job notification email to another address, use the -M option, eg #PBS -M bob@bob.com

Another example

From the Introduction to the Unix Shell for HPC users course lets run the do-stats.sh script as a job.

First, change to the folder:

cd ~/workshop/2024-2/shell-lesson-data/north-pacific-gyre

#!/bin/bash -l
#PBS -N GooStatsRun01
#PBS -l select=1:ncpus=1:mem=2gb
#PBS -l walltime=00:30:00
#PBS -m abe
cd $PBS_O_WORKDIR

# Calculate stats for data files.
for datafile in NENE*A.txt NENE*B.txt
do
    echo $datafile
    bash goostats.sh $datafile stats-$datafile
done

Call this do-goostats.pbs

Now submit to the scheduler:

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