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The results are output in the folder name specified in the .nexftlow.config file under the outdir parameter. It is generally set to be results.

Code Block
// nextflow.config
params {
  outdir = 'results'
}

Nextflow log, metrics and reports

By default, Nextflow will create a log file in the working directory called .nextflow.log. This file is hidden but you can see it using the command:

Code Block
ls -a

If you rerun the pipeline in the same folder, the previous .nextflow.log will be renamed .nextflow.log.1 and a new .nextflow.log will be generated.

You can change the default location by specifying a different location

Code Block
nextflow -log ~/code/nextflow.log run

PBS output