...
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nextflow -log ~/code/nextflow.log run |
You can list the execution logs of previous invocations of all pipelines in a directory by running the command:
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TIMESTAMP DURATION RUN NAME STATUS REVISION ID SESSION ID COMMAND
2024-09-23 15:38:11 27m 5s cranky_pike OK 5901bea438 449030e3-e32d-4010-bc1c-9d6f1f62cc45 nextflow run nf-core/smrnaseq -profile test,singularity --outdir results -r 2.3.1
2024-09-24 14:18:37 1m 45s agitated_bose OK 5901bea438 449030e3-e32d-4010-bc1c-9d6f1f62cc45 nextflow run nf-core/smrnaseq -profile test,singularity --outdir results -r 2.3.1 -resume --multiqc_title smrnaseq |
If we want to get more information about an individual run we can add the run name or session ID to the log command.
For example:
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nextflow log agitated_bose |
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/mnt/hpccs01/home/gauthiem/smrnaseq_cl/work/d5/fd4b1581fd60a640f586ca9557e425
/mnt/hpccs01/home/gauthiem/smrnaseq_cl/work/20/88bac48f8031d973e7d47e215baf73
/mnt/hpccs01/home/gauthiem/smrnaseq_cl/work/6d/427866552c311523327e16d3ec0b32
/mnt/hpccs01/home/gauthiem/smrnaseq_cl/work/c0/aa328b61d23c7f1ca738aa5f5fc142
/mnt/hpccs01/home/gauthiem/smrnaseq_cl/work/b5/3e73ab56f65b707a1db9767ce472ea
/mnt/hpccs01/home/gauthiem/smrnaseq_cl/work/aa/35a63e37a55434920fc7f3e4a99c80
/mnt/hpccs01/home/gauthiem/smrnaseq_cl/work/95/6d0db42195231bb9861871c7700798
... |
Generate an html run report
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<div>
<h2>${name}</h2>
<div>
Script:
<pre>${script}</pre>
</div>
<ul>
<li>Exit: ${exit}</li>
<li>Status: ${status}</li>
<li>Work dir: ${workdir}</li>
<li>Container: ${container}</li>
</ul>
</div> |
PBS output