Copy and paste the code below to the terminal:
| Code Block |
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cp $HOME/workshop/2024/rnaseq/data/samplesheet.csv $HOME/workshop/2024-2/session4_RNAseq/runs/run3run2_RNAseq cd $HOME/workshop/2024-2/session4_RNAseq/runs/run3run2_RNAseq |
Line 1: Copy the samplesheet.csv file to the working directory
Line 2: move to the working directory
Copy the PBS Pro script to run the nf-core/rnaseq pipeline:
| Code Block |
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cp $HOME/workshop/2024/rnaseq/scripts/launch_nf-core_RNAseq_pipeline.pbs $HOME/workshop/2024-2/session4_RNAseq/runs/run3run2_RNAseq |
Adjusting the Trim Galore (read trimming) options
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