| Table of Contents |
|---|
...
In addition, eResearch have developed a full 16S amplicon analysis pipeline using NextFlow. We recommend you use the bam files generated from this PacBio analysis as input for this pipeline:Insert link here for ampliseq pipeline
16S amplicon analysis pipeline (NextFlow Ampliseq)
Running analysis on QUTs HPC
...
If you haven’t been set up or have used the HPC previously, click on this link for information on how to get access to and use the HPC:
Need a link here for HPC access and usage
Creating a shared workspace on the HPC
...
To request a node using PBS, submit a shell script containing your RAM/CPU/analysis time requirements and the code needed to run your analysis. For an overview of submitting a PBS job, see here:
Need a link here for creating PBS jobs
Alternatively, you can start up an ‘interactive’ node, using the following:
...