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https://nf-co.re/scrnaseq/1.1.0/output
Table of contents
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Analysis environment
Nextflow is designed to be run on Linux command-line. This guide assumes the QUT HPC (high performance computing cluster) will be used for this. When running a complex analysis (e.g. a Nextflow workflow) on the HPC, commands are submitted into a job queue using a system called PBS.
If you don’t have a HPC account or haven’t used the HPC/PBS before, click on the below link for details on how to create a HP account and how to use the PBS job submission system:
This nf-core/scrnaseq guide is designed so that people with even minimal Linux command-line experience can use it. However, some familiarity with using Linux at a command line is recommended. If you have no experience at all using Linux commands, we advise you watch an introductory video or video series on the topic, such as:
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