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#!/bin/bash -l #PBS -N ENA_download ENA data #PBS -l select=1:ncpus=2:mem=8gb #PBS -l walltime=24:00:00 #work on current directory (folder) cd $PBS_O_WORKDIR #copy and paste below the content of the ENA download script wget -nc ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/072/SRR20622172/SRR20622172.fastq.gz wget -nc ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/073/SRR20622173/SRR20622173.fastq.gz wget -nc ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/077/SRR20622177/SRR20622177.fastq.gz wget -nc ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/076/SRR20622176/SRR20622176.fastq.gz wget -nc ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/080/SRR20622180/SRR20622180.fastq.gz wget -nc ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/074/SRR20622174/SRR20622174.fastq.gz wget -nc ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/078/SRR20622178/SRR20622178.fastq.gz wget -nc ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/079/SRR20622179/SRR20622179.fastq.gz wget -nc ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR206/075/SRR20622175/SRR20622175.fastq.gz |
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