Page Comparison

Results folder

The results are output in the folder name specified in the .nexftlow.config file under the outdir parameter. It is generally set to be results.

params {
  outdir = 'results'
}

Nextflow log, metrics and reports

By default, Nextflow will create a log file in the working directory called .nextflow.log. This file is hidden but you can see it using the command:

...

Generate an html run report

cat <<EOF > my_template.html
<div>
<h2>$<h2>\${name}</h2>
<div>
Script:
<pre>$<pre>\${script}</pre>
</div>

<ul>
    <li>Exit: \${exit}</li>
    <li>Status: \${status}</li>
    <li>Work dir: \${workdir}</li>
    <li>Container: \${container}</li>
</ul>
</div>

...

EOF

Run the following command:

nextflow log agitated_bose -t template.html > nextflow_run_report.html