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A HPC account
Nextflow installed on the HPC
PuTTy installed on your local computer
Access your HPC home directory from your PC
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If you haven’t installed Nextflow, follow the instructions in this link: Installing Nextflow
You’ll need PuTTY on your PC to access the HPC.
You can download PuTTY from here: https://the.earth.li/~sgtatham/putty/latest/w64/putty.exe
Then add the HPC (Lyra) address: lyra.qut.edu.au and then click ‘open’.
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Setup Windows File Explorer to access your HPC home account. Follow the instructions here:
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Copy the Illumina and Nanopore fastq files to their respective workshop directories like so:
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cd $HOME
cd meta_workshop
cp /work/training/metagenomics/public_data/Illumina*.fastq.gz illumina/fastq
cp /work/training/metagenomics/public_data/Nanopore*.fastq.gz nanopore/fastq
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