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Assemble the genome of two M. alpina strains (Mortierella alpina and Mortierella sp.) sequenced at QUT.
Identify DAG (Diacyl-glycerol) and Phopholipase (PLA, PLB, PLC and/or PLD) genes
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#step1: decompress file gzip -d GCA_015679415.1_UCR_MalpAD072_1.0_protein.faa.gz #step2: wrap sequence to one line python2.7 /work/speight_team/projects/yeast_genomes/scripts/extract_seqs.py GCA_015679415.1_UCR_MalpAD072_1.0_protein.faa 0 | sed 's/lcl|//' > GCA_015679415.1_UCR_MalpAD072_1.0_protein.mod.faa #step3" check file less -S GCA_015679415.1_UCR_MalpAD072_1.0_protein.mod.faa #use grep to fetch name of interest grep -A 1 "Phospholipase" GCA_015679415.1_UCR_MalpAD072_1.0_protein.mod.faa | sed '/^--$/d' > Phospholipase_proteins.fasta |
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