Session 3 - Variant analysis using Nanopore data

Experiment Accession

Experiment Title

Organism Name

Instrument

Submitter

Study Accession

Study Title

Sample Accession

Total Size, Mb

Total Spots

Total Bases

Library Strategy

Library Source

Library Selection

SRX19406878

NA12878 DNA sequencing from nanopore WSG consortium - basecalled sequences (Guppy 6.1.3 super accuracy)

Homo sapiens

MinION

Garvan Institute of Medical Research

SRP421403

Curated publicly available nanopore datasets

SRS16801715

78526.8

11173458

97545895593

WGS

GENOMIC

RANDOM

SRX14748451

Homo sapiens

MinION

Drexel University

SRP367676

Multiplex structural variant detection by whole-genome mapping and nanopore sequencing.

SRS12509856

821.1

348226

972620520

OTHER

GENOMIC

other

ERX8211414

MinION sequencing

Homo sapiens

MinION

the university of hong kong

ERP135493

Target enrichment sequencing and variant calling on medical exome using ONT MinION

ERS10590135

10669.72

10644000

12212807287

Targeted-Capture

GENOMIC

PCR

ERX8211413

MinION sequencing

Homo sapiens

MinION

the university of hong kong

ERP135493

Target enrichment sequencing and variant calling on medical exome using ONT MinION

ERS10590135

8961.02

9636172

10382057986

Targeted-Capture

GENOMIC

PCR

SRX13323057

Nanopore targeted sequencing (ReadUntil/ReadFish) of NA12878-HG001- basecalled sequences

Homo sapiens

MinION

Garvan Institute of Medical Research

SRP349335

Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing

SRS11230747

17107.98

12278391

20238395479

WGS

GENOMIC

other

SRX13322984

Nanopore targeted sequencing (ReadUntil/ReadFish) of NA12878-HG001- basecalled sequences

Homo sapiens

MinION

Garvan Institute of Medical Research

SRP349335

Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing

SRS11230712

6629.97

5513156

7815960904

WGS

GENOMIC

other