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Overview

  1. Install NextFlow locally

  2. PBS session: qsub -I -S /bin/bash -l walltime=168:00:00 -l select=1:ncpus=4:mem=8gb

  3. tmux

  4. module load java

  5. Test NextFlow: nextflow run nf-core/ampliseq -profile test,singularity --metadata "Metadata.tsv"

  • failed! Works without --metadata "Metadata.tsv". point to wrong file?

  1. Run Nextflow tower

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