Airway smooth muscle cells
Himes BE, Jiang X, Wagner P, Hu R, Wang Q, Klanderman B, Whitaker RM, Duan Q, Lasky-Su J, Nikolos C, Jester W, Johnson M, Panettieri R Jr, Tantisira KG, Weiss ST, Lu Q. “RNA-Seq Transcriptome Profiling Identifies CRISPLD2 as a Glucocorticoid Responsive Gene that Modulates Cytokine Function in Airway Smooth Muscle Cells.” PLoS One. 2014 Jun 13;9(6):e99625. PMID: 24926665. GEO: GSE52778.
From the abstract, a brief description of the RNA-Seq experiment on airway smooth muscle (ASM) cell lines: “Using RNA-Seq, a high-throughput sequencing method, we characterized transcriptomic changes in four primary human ASM cell lines that were treated with dexamethasone - a potent synthetic glucocorticoid (1 micromolar for 18 hours).”
Data source:
NCBI - Short Read Archive
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA229998
Sample information
## SampleName cell dex Run ## SRR1039508 GSM1275862 tissue: human airway smooth muscle cells untrt SRR1039508 ## SRR1039509 GSM1275863 tissue: human airway smooth muscle cells untrt SRR1039509 ## SRR1039510 GSM1275864 tissue: human airway smooth muscle cells untrt SRR1039510 ## SRR1039511 GSM1275865 tissue: human airway smooth muscle cells untrt SRR1039511 ## SRR1039512 GSM1275866 tissue: human airway smooth muscle cells untrt SRR1039512 ## SRR1039513 GSM1275867 tissue: human airway smooth muscle cells untrt SRR1039513 ## SRR1039514 GSM1275868 tissue: human airway smooth muscle cells untrt SRR1039514 ## SRR1039515 GSM1275869 tissue: human airway smooth muscle cells untrt SRR1039515 ## SRR1039516 GSM1275870 tissue: human airway smooth muscle cells untrt SRR1039516 ## SRR1039517 GSM1275871 tissue: human airway smooth muscle cells untrt SRR1039517 ## SRR1039518 GSM1275872 tissue: human airway smooth muscle cells untrt SRR1039518 ## SRR1039519 GSM1275873 tissue: human airway smooth muscle cells untrt SRR1039519 ## SRR1039520 GSM1275874 tissue: human airway smooth muscle cells untrt SRR1039520 ## SRR1039521 GSM1275875 tissue: human airway smooth muscle cells untrt SRR1039521 ## SRR1039522 GSM1275876 tissue: human airway smooth muscle cells untrt SRR1039522 ## SRR1039523 GSM1275877 tissue: human airway smooth muscle cells untrt SRR1039523 ## avgLength Experiment Sample BioSample ## SRR1039508 126 SRX384345 SRS508568 SAMN02422669 ## SRR1039509 126 SRX384346 SRS508567 SAMN02422675 ## SRR1039510 126 SRX384347 SRS508570 SAMN02422668 ## SRR1039511 126 SRX384348 SRS508569 SAMN02422667 ## SRR1039512 126 SRX384349 SRS508571 SAMN02422678 ## SRR1039513 87 SRX384350 SRS508572 SAMN02422670 ## SRR1039514 126 SRX384351 SRS508574 SAMN02422681 ## SRR1039515 114 SRX384352 SRS508573 SAMN02422671 ## SRR1039516 120 SRX384353 SRS508575 SAMN02422682 ## SRR1039517 126 SRX384354 SRS508576 SAMN02422673 ## SRR1039518 126 SRX384355 SRS508578 SAMN02422679 ## SRR1039519 107 SRX384356 SRS508577 SAMN02422672 ## SRR1039520 101 SRX384357 SRS508579 SAMN02422683 ## SRR1039521 98 SRX384358 SRS508580 SAMN02422677 ## SRR1039522 125 SRX384359 SRS508582 SAMN02422680 ## SRR1039523 126 SRX384360 SRS508581 SAMN02422674