Aims:
Implement an end-to-end bioinformatics workflow that is reproducible, robust, scalable and compute infrastructure agnostic
Leaverage from the host plant antiviral response pathway to increase sensitivity and specificity of pathogen detections
Prevent or minimise the reporting of cross-sample contaminations owing to index hopping events (false positive detections)
Method
The open source VirReport code is available at https://github.com/eresearchqut/VirReport
Get a copy of the tool:
git clone https://github.com/eresearchqut/VirReport.git