This page provides a guide to QUT users to run the nf-core/sarek workflow on the local HPC.
Further details on the workflow can be found at:
https://nf-co.re/sarek/2.6.1/usage
Install Nextflow
Find Nextflow details on how to install Nextflow, prepare a cextflow.config file and run a PBS pro submission script for Nextflow pipelines.
Additional information available here: https://nf-co.re/usage/installation
Installing Containers
Singularity is now installed and made available to all QUT users on the HPC. There is no need to install it.
Docker is not available on the HPC and we recommend to Singularity to run the nf-core/sarek pipeline.