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Based on what we have learned so far, now a challenge for you:

  • Run the expression profile of human Drosha samples (exercise 6.6) against the MirGeneDB curated database (exercise 6.5)

Hints:

Create a working directory for the exercise:

mkdir $HOME/workshop/2024-2/session6_smallRNAs/runs/run4_human_drosha_MirGeneDB 

Copy the relevant samplesheet.csv, nextflow.config and launch script into the above folder and run the pipeline.

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