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https://github.com/PrestonLeung/Nano-Q
Create a conda environment
Prepare an “environment.yml” file that contains the following tool specifications
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conda activate nanoQ |
Alternatively - manually run each of the following commands:
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#create an interactive session qsub -I -S /bin/bash -l walltime=10:00:00 -l select=1:ncpus=2:mem=4gb #create conda environment conda create --name nanoQ2 python=3.7 conda activate nanoQ2 #install tools conda install -c bioconda pysam conda install -c conda-forge numpy conda install -c conda-forge scipy conda install -c conda-forge matplotlib conda install -c conda-forge biopython |
Map long ONT reads onto a reference genome
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