Legacy user guides
- Using nf-core/sarek pipeline should be easy
- bk_2024 - Semester One: Hands-on variant calling and metagenomics analyses using QUT's HPC and Nextflow
- nf-core/rnaseq: downstream analysis in R
- Downloading data from BaseSpace
- RNAseq - Star 2 pass approach (Ronin)
- Metagenomics Software on Ronin Cloud
- RNA-seq using RASflow: genome- or transcriptome-based analysis
- Deprecated - ONT variant analysis
- Microbiome Analysis Infrastructure Roadmap V1.1
- Downstream analysis of NextFlow ampliseq output (16S amplicon analysis)
- VSD-1.0 (Virus Surveillance and Diagnosis)
- Variant (vcf) analysis using R in Jupyter
- Remove
- Remove also
- Creating links to open Jupyter Notebooks in the Jupyter Hub
- copy Session 3 - Variant analysis using Nanopore data
- copy_Session 5: Analysis of amplicon sequencing results in R
- Copy of eResearch - single cell RNA-Seq analysis (10x Genomics)
- Copy of Nanostring DSP protein assay data QC, exploration, normalisation and analysis.
- Testing RNAseq parameters
- Deprecated - SRA using SRA Toolkit
, multiple selections available,