Exercise 2: Run nf-core/sarek using a second family trio data (HapMap; Genome in a Bottle)
The pipeline requires preparing at least 2 files:
Metadata file (samplesheet.csv) thatspecifies the following information:
| Code Block |
|---|
patient,sample,lane,fastq_1,fastq_2
ID1,S1,L002,/full/path/to/ID1_S1_L002_R1_001.fastq.gz,/full/path/to/ID1_S1_L002_R2_001.fastq.gz |