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Exercise 2: Run nf-core/sarek using a second family trio data (HapMap; Genome in a Bottle)

 

The pipeline requires preparing at least 2 files:

  • Metadata file (samplesheet.csv) that specifies the following information:

patient,sample,lane,fastq_1,fastq_2
ID1,S1,L002,/full/path/to/ID1_S1_L002_R1_001.fastq.gz,/full/path/to/ID1_S1_L002_R2_001.fastq.gz

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