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In this section we’ll be revisiting the variant calling workflows from sessions 2 and 3. Specifically we’ll be doing some further analysis of the nfcore/sarek output.

You downloaded the 3 nfcore/sarek runs to H:/workshop/sarek/runs/. These are: run2_trio, run3_liver and run4_trio2.

SNPeff and SNPSift

G:\Other computers\Home PC\Desktop\QUT\Liver_exome_variants\sarek

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